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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
ACC rs10012147 chr4:180519376 G/A SMAD4 chr18:48554764-48611415:+ -1.85 -8 1.27E-10 Box Plot
ACC rs10014386 chr4:180519550 C/T SMAD4 chr18:48554764-48611415:+ -1.84 -7.88 1.97E-10 Box Plot
ACC rs1002487 chr1:26865971 T/C GAGE2D chrX:49207160-49214420:+ 0.68 8.06 1.02E-10 Box Plot
ACC rs1002487 chr1:26865971 T/C TFDP3 chrX:132350697-132352376:- 1.04 10.63 1.2E-14 Box Plot
ACC rs10031196 chr4:30340411 T/C OR6C3 chr12:55725485-55726420:+ 1.16 10.36 2.99E-14 Box Plot
ACC rs10032193 chr4:180618971 G/A GC chr4:72607410-72669758:- 0.89 9.4 8.38E-13 Box Plot
ACC rs10032765 chr4:63722484 T/C GPR128 chr3:100328433-100414323:+ -1.47 -8.58 1.55E-11 Box Plot
ACC rs10051810 chr5:120322573 A/G GAGE2D chrX:49207160-49214420:+ 1.22 11.62 4.6E-16 Box Plot
ACC rs10060356 chr5:120319185 G/A GAGE2D chrX:49207160-49214420:+ 1.22 11.62 4.6E-16 Box Plot
ACC rs10079133 chr5:120326729 A/G GAGE2D chrX:49207160-49214420:+ 1.22 11.62 4.6E-16 Box Plot
ACC rs10087486 chr8:112918488 G/C KRT6C chr12:52862300-52867569:- 0.76 9.02 3.28E-12 Box Plot
ACC rs10087819 chr8:112909740 T/C KRT6C chr12:52862300-52867569:- 0.85 9.67 3.27E-13 Box Plot
ACC rs10088662 chr8:112936603 A/G KRT6C chr12:52862300-52867569:- 0.76 9.02 3.28E-12 Box Plot
ACC rs10091498 chr8:112949600 C/G KRT6C chr12:52862300-52867569:- -0.76 -8.99 3.58E-12 Box Plot
ACC rs10097925 chr8:113227264 A/G KRT6C chr12:52862300-52867569:- 0.65 7.86 2.11E-10 Box Plot